Package: stmgp
Type: Package
Title: Rapid and Accurate Genetic Prediction Modeling for Genome-Wide
        Association or Whole-Genome Sequencing Study Data
Version: 1.0.4.2
Date: 2025-10-03
Authors@R: person(given = "Masao", family = "Ueki", role = c("aut", "cre"), email = "uekimrsd@nifty.com")
Maintainer: Masao Ueki <uekimrsd@nifty.com>
Description: Rapidly build accurate genetic prediction models for
        genome-wide association or whole-genome sequencing study data
        by smooth-threshold multivariate genetic prediction (STMGP)
        method. Variable selection is performed using marginal
        association test p-values with an optimal p-value cutoff
        selected by Cp-type criterion. Quantitative and binary traits
        are modeled respectively via linear and logistic regression
        models. A function that works through PLINK software (Purcell
        et al. 2007 <DOI:10.1086/519795>, Chang et al. 2015
        <DOI:10.1186/s13742-015-0047-8>)
        <https://www.cog-genomics.org/plink2> is provided. Covariates
        can be included in regression model.
SystemRequirements: PLINK must be installed
License: GPL (>= 2)
Depends: MASS
NeedsCompilation: no
Packaged: 2026-10-10 13:39:24 UTC; root
Author: Masao Ueki [aut, cre]
Repository: https://uekim.r-universe.dev
Date/Publication: 2025-10-03 02:20:02 UTC
RemoteUrl: https://github.com/cran/stmgp
RemoteRef: HEAD
RemoteSha: 8021b1020e9544a823a7396213588b57ec509bbf